From what I understand, Logitech has discontinued the Harmony. Look into Crestron or URC for systems that can controlled over IP and RS232. This can be set up on a simple, easy to use handheld remote for not alot a money considering what you have invested in hardware.

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One step from the Presidency
#1 Trinnov Altitude 32-8-16, 271, 8000XE, 7200SEHC, 7200.2, Seaton F18, JL Fathom F113, Revel w990's, Kef R7, ATI 528 Amp, JVC RS4100K, SI screen. Roon Nucleus+, Eno AG, Eno M link, 218.
#2 Mark Levinson No5105, Ayre VX8 and CX8, Vandersteen Treo CT, Preamp varies.
#3 Meridian Ellipse